, including all inherited members.
actorToAtomMap() const | vl::Molecule | [inline] |
actorToAtomMap() | vl::Molecule | [inline] |
actorToBondMap() const | vl::Molecule | [inline] |
actorToBondMap() | vl::Molecule | [inline] |
actorTree() const | vl::Molecule | [inline] |
actorTree() | vl::Molecule | [inline] |
addAtom(Atom *atom) | vl::Molecule | |
addBond(Bond *bond) | vl::Molecule | |
addBond(Atom *a1, Atom *a2) | vl::Molecule | |
aromaticRingColor() const | vl::Molecule | [inline] |
as() | vl::Object | [inline] |
as() const | vl::Object | [inline] |
atom(int index) const | vl::Molecule | |
atom(int index) | vl::Molecule | |
atomCount() const | vl::Molecule | [inline] |
atomDetail() const | vl::Molecule | [inline] |
atomLabelEffect() const | vl::Molecule | [inline] |
atomLabelEffect() | vl::Molecule | [inline] |
atomLabelTemplate() const | vl::Molecule | [inline] |
atomLabelTemplate() | vl::Molecule | [inline] |
atoms() const | vl::Molecule | [inline] |
atoms() | vl::Molecule | [inline] |
atomsStyle() | vl::Molecule | [protected] |
atomToActorMap() const | vl::Molecule | [inline] |
atomToActorMap() | vl::Molecule | [inline] |
automaticDelete() const | vl::Object | [inline] |
ballAndStickStyle() | vl::Molecule | [protected] |
bond(int index) const | vl::Molecule | |
bond(int index) | vl::Molecule | |
bond(Atom *a1, Atom *a2) const | vl::Molecule | |
bond(Atom *a1, Atom *a2) | vl::Molecule | |
bondCount() const | vl::Molecule | [inline] |
bondDetail() const | vl::Molecule | [inline] |
bonds() const | vl::Molecule | [inline] |
bonds() | vl::Molecule | [inline] |
bondToActorMap() const | vl::Molecule | [inline] |
bondToActorMap() | vl::Molecule | [inline] |
computeAtomAdjacency() | vl::Molecule | |
cycle(int i) const | vl::Molecule | [inline] |
cycle(int i) | vl::Molecule | [inline] |
cycles() const | vl::Molecule | [inline] |
cycles() | vl::Molecule | [inline] |
decReference() | vl::Object | [inline] |
eraseAllAtoms() | vl::Molecule | |
eraseAllBonds() | vl::Molecule | |
eraseAtom(Atom *atom) | vl::Molecule | |
eraseAtom(int index) | vl::Molecule | |
eraseBond(Bond *bond) | vl::Molecule | |
eraseBond(int bond) | vl::Molecule | |
eraseBond(Atom *a1, Atom *a2) | vl::Molecule | |
eraseBond(int a1, int a2) | vl::Molecule | |
generateAtomLabel(const Atom *atom, Transform *tr) | vl::Molecule | [protected] |
generateAtomLabels() | vl::Molecule | [protected] |
generateRings() | vl::Molecule | [protected] |
id() const | vl::Molecule | [inline] |
incidentBonds(std::vector< Bond * > &inc_bonds, Atom *atom) | vl::Molecule | |
incReference() const | vl::Object | [inline] |
isActorToMoleculeMapEnabled() const | vl::Molecule | [inline] |
isMoleculeToActorMapEnabled() const | vl::Molecule | [inline] |
lineWidth() const | vl::Molecule | [inline] |
mActorToAtomMap | vl::Molecule | [protected] |
mActorToBondMap | vl::Molecule | [protected] |
mActorToMoleculeMapEnabled | vl::Molecule | [protected] |
mActorTree | vl::Molecule | [protected] |
mAromaticRingColor | vl::Molecule | [protected] |
mAtomDetail | vl::Molecule | [protected] |
mAtomLabelEffect | vl::Molecule | [protected] |
mAtomLabelTemplate | vl::Molecule | [protected] |
mAtoms | vl::Molecule | [protected] |
mAtomToActorMap | vl::Molecule | [protected] |
mAutomaticDelete | vl::Object | [protected] |
mBondDetail | vl::Molecule | [protected] |
mBonds | vl::Molecule | [protected] |
mBondToActorMap | vl::Molecule | [protected] |
mCycles | vl::Molecule | [protected] |
mId | vl::Molecule | [protected] |
mLineWidth | vl::Molecule | [protected] |
mMoleculeName | vl::Molecule | [protected] |
mMoleculeStyle | vl::Molecule | [protected] |
mMoleculeToActorMapEnabled | vl::Molecule | [protected] |
mObjectName | vl::Object | [protected] |
Molecule() | vl::Molecule | |
Molecule(const Molecule &other) | vl::Molecule | [inline] |
moleculeName() const | vl::Molecule | [inline] |
moleculeStyle() const | vl::Molecule | [inline] |
mRefCountMutex | vl::Object | [protected] |
mReferenceCount | vl::Object | [mutable, protected] |
mRingOffset | vl::Molecule | [protected] |
mShowAtomNames | vl::Molecule | [protected] |
mSmoothLines | vl::Molecule | [protected] |
mTags | vl::Molecule | [protected] |
mTransformTree | vl::Molecule | [protected] |
Object() | vl::Object | [inline] |
Object(const Object &other) | vl::Object | [inline] |
objectName() const | vl::Object | [inline] |
operator=(const Molecule &other) | vl::Molecule | |
vl::Object::operator=(const Object &other) | vl::Object | [inline] |
prepareAtomInsert(int bonus=100) | vl::Molecule | [inline, protected] |
prepareBondInsert(int bonus=100) | vl::Molecule | [inline, protected] |
prepareForRendering() | vl::Molecule | |
refCountMutex() | vl::Object | [inline] |
refCountMutex() const | vl::Object | [inline] |
referenceCount() const | vl::Object | [inline] |
reset() | vl::Molecule | |
ringOffset() const | vl::Molecule | [inline] |
setActorToMoleculeMapEnabled(bool enabled) | vl::Molecule | [inline] |
setAromaticBondsColor(const fvec4 &color) | vl::Molecule | |
setAromaticRingColor(const fvec4 &color) | vl::Molecule | [inline] |
setAtomColors(const fvec4 &color) | vl::Molecule | |
setAtomDetail(int detail) | vl::Molecule | [inline] |
setAtomRadii(float radius) | vl::Molecule | |
setAtomTypeVisible(EAtomType type, bool visible) | vl::Molecule | |
setAutomaticDelete(bool autodel_on) | vl::Object | [inline] |
setBondDetail(int detail) | vl::Molecule | [inline] |
setBondRadii(float radius) | vl::Molecule | |
setCalculatedAtomRadii(float percentage=1.0f) | vl::Molecule | |
setCovalentAtomRadii(float percentage=1.0f) | vl::Molecule | |
setCPKAtomColors() | vl::Molecule | |
setEmpiricalAtomRadii(float percentage=1.0f) | vl::Molecule | |
setId(unsigned int id) | vl::Molecule | [inline] |
setLineWidth(float w) | vl::Molecule | [inline] |
setMoleculeName(const String &name) | vl::Molecule | [inline] |
setMoleculeStyle(EMoleculeStyle style) | vl::Molecule | [inline] |
setMoleculeToActorMapEnabled(bool enabled) | vl::Molecule | [inline] |
setObjectName(const char *name) | vl::Object | [inline] |
setRefCountMutex(IMutex *mutex) | vl::Object | [inline] |
setRingOffset(float offset) | vl::Molecule | [inline] |
setShowAtomNames(bool show) | vl::Molecule | [inline] |
setSmoothLines(bool smooth) | vl::Molecule | [inline] |
setVanDerWaalsAtomRadii(float percentage=1.0f) | vl::Molecule | |
showAtomNames() const | vl::Molecule | [inline] |
smoothLines() const | vl::Molecule | [inline] |
sticksStyle() | vl::Molecule | [protected] |
tags() | vl::Molecule | [inline] |
tags() const | vl::Molecule | [inline] |
transformTree() | vl::Molecule | [inline] |
transformTree() const | vl::Molecule | [inline] |
wireframeStyle() | vl::Molecule | [protected] |
~Molecule() | vl::Molecule | [inline] |
~Object() | vl::Object | [protected, virtual] |