, including all inherited members.
| actorToAtomMap() const | vl::Molecule | [inline] |
| actorToAtomMap() | vl::Molecule | [inline] |
| actorToBondMap() const | vl::Molecule | [inline] |
| actorToBondMap() | vl::Molecule | [inline] |
| actorTree() const | vl::Molecule | [inline] |
| actorTree() | vl::Molecule | [inline] |
| addAtom(Atom *atom) | vl::Molecule | |
| addBond(Bond *bond) | vl::Molecule | |
| addBond(Atom *a1, Atom *a2) | vl::Molecule | |
| aromaticRingColor() const | vl::Molecule | [inline] |
| as() | vl::Object | [inline] |
| as() const | vl::Object | [inline] |
| atom(int index) const | vl::Molecule | |
| atom(int index) | vl::Molecule | |
| atomCount() const | vl::Molecule | [inline] |
| atomDetail() const | vl::Molecule | [inline] |
| atomLabelEffect() const | vl::Molecule | [inline] |
| atomLabelEffect() | vl::Molecule | [inline] |
| atomLabelTemplate() const | vl::Molecule | [inline] |
| atomLabelTemplate() | vl::Molecule | [inline] |
| atoms() const | vl::Molecule | [inline] |
| atoms() | vl::Molecule | [inline] |
| atomsStyle() | vl::Molecule | [protected] |
| atomToActorMap() const | vl::Molecule | [inline] |
| atomToActorMap() | vl::Molecule | [inline] |
| automaticDelete() const | vl::Object | [inline] |
| ballAndStickStyle() | vl::Molecule | [protected] |
| bond(int index) const | vl::Molecule | |
| bond(int index) | vl::Molecule | |
| bond(Atom *a1, Atom *a2) const | vl::Molecule | |
| bond(Atom *a1, Atom *a2) | vl::Molecule | |
| bondCount() const | vl::Molecule | [inline] |
| bondDetail() const | vl::Molecule | [inline] |
| bonds() const | vl::Molecule | [inline] |
| bonds() | vl::Molecule | [inline] |
| bondToActorMap() const | vl::Molecule | [inline] |
| bondToActorMap() | vl::Molecule | [inline] |
| computeAtomAdjacency() | vl::Molecule | |
| cycle(int i) const | vl::Molecule | [inline] |
| cycle(int i) | vl::Molecule | [inline] |
| cycles() const | vl::Molecule | [inline] |
| cycles() | vl::Molecule | [inline] |
| decReference() | vl::Object | [inline] |
| eraseAllAtoms() | vl::Molecule | |
| eraseAllBonds() | vl::Molecule | |
| eraseAtom(Atom *atom) | vl::Molecule | |
| eraseAtom(int index) | vl::Molecule | |
| eraseBond(Bond *bond) | vl::Molecule | |
| eraseBond(int bond) | vl::Molecule | |
| eraseBond(Atom *a1, Atom *a2) | vl::Molecule | |
| eraseBond(int a1, int a2) | vl::Molecule | |
| generateAtomLabel(const Atom *atom, Transform *tr) | vl::Molecule | [protected] |
| generateAtomLabels() | vl::Molecule | [protected] |
| generateRings() | vl::Molecule | [protected] |
| id() const | vl::Molecule | [inline] |
| incidentBonds(std::vector< Bond * > &inc_bonds, Atom *atom) | vl::Molecule | |
| incReference() const | vl::Object | [inline] |
| isActorToMoleculeMapEnabled() const | vl::Molecule | [inline] |
| isMoleculeToActorMapEnabled() const | vl::Molecule | [inline] |
| lineWidth() const | vl::Molecule | [inline] |
| mActorToAtomMap | vl::Molecule | [protected] |
| mActorToBondMap | vl::Molecule | [protected] |
| mActorToMoleculeMapEnabled | vl::Molecule | [protected] |
| mActorTree | vl::Molecule | [protected] |
| mAromaticRingColor | vl::Molecule | [protected] |
| mAtomDetail | vl::Molecule | [protected] |
| mAtomLabelEffect | vl::Molecule | [protected] |
| mAtomLabelTemplate | vl::Molecule | [protected] |
| mAtoms | vl::Molecule | [protected] |
| mAtomToActorMap | vl::Molecule | [protected] |
| mAutomaticDelete | vl::Object | [protected] |
| mBondDetail | vl::Molecule | [protected] |
| mBonds | vl::Molecule | [protected] |
| mBondToActorMap | vl::Molecule | [protected] |
| mCycles | vl::Molecule | [protected] |
| mId | vl::Molecule | [protected] |
| mLineWidth | vl::Molecule | [protected] |
| mMoleculeName | vl::Molecule | [protected] |
| mMoleculeStyle | vl::Molecule | [protected] |
| mMoleculeToActorMapEnabled | vl::Molecule | [protected] |
| mObjectName | vl::Object | [protected] |
| Molecule() | vl::Molecule | |
| Molecule(const Molecule &other) | vl::Molecule | [inline] |
| moleculeName() const | vl::Molecule | [inline] |
| moleculeStyle() const | vl::Molecule | [inline] |
| mRefCountMutex | vl::Object | [protected] |
| mReferenceCount | vl::Object | [mutable, protected] |
| mRingOffset | vl::Molecule | [protected] |
| mShowAtomNames | vl::Molecule | [protected] |
| mSmoothLines | vl::Molecule | [protected] |
| mTags | vl::Molecule | [protected] |
| mTransformTree | vl::Molecule | [protected] |
| Object() | vl::Object | [inline] |
| Object(const Object &other) | vl::Object | [inline] |
| objectName() const | vl::Object | [inline] |
| operator=(const Molecule &other) | vl::Molecule | |
| vl::Object::operator=(const Object &other) | vl::Object | [inline] |
| prepareAtomInsert(int bonus=100) | vl::Molecule | [inline, protected] |
| prepareBondInsert(int bonus=100) | vl::Molecule | [inline, protected] |
| prepareForRendering() | vl::Molecule | |
| refCountMutex() | vl::Object | [inline] |
| refCountMutex() const | vl::Object | [inline] |
| referenceCount() const | vl::Object | [inline] |
| reset() | vl::Molecule | |
| ringOffset() const | vl::Molecule | [inline] |
| setActorToMoleculeMapEnabled(bool enabled) | vl::Molecule | [inline] |
| setAromaticBondsColor(const fvec4 &color) | vl::Molecule | |
| setAromaticRingColor(const fvec4 &color) | vl::Molecule | [inline] |
| setAtomColors(const fvec4 &color) | vl::Molecule | |
| setAtomDetail(int detail) | vl::Molecule | [inline] |
| setAtomRadii(float radius) | vl::Molecule | |
| setAtomTypeVisible(EAtomType type, bool visible) | vl::Molecule | |
| setAutomaticDelete(bool autodel_on) | vl::Object | [inline] |
| setBondDetail(int detail) | vl::Molecule | [inline] |
| setBondRadii(float radius) | vl::Molecule | |
| setCalculatedAtomRadii(float percentage=1.0f) | vl::Molecule | |
| setCovalentAtomRadii(float percentage=1.0f) | vl::Molecule | |
| setCPKAtomColors() | vl::Molecule | |
| setEmpiricalAtomRadii(float percentage=1.0f) | vl::Molecule | |
| setId(unsigned int id) | vl::Molecule | [inline] |
| setLineWidth(float w) | vl::Molecule | [inline] |
| setMoleculeName(const String &name) | vl::Molecule | [inline] |
| setMoleculeStyle(EMoleculeStyle style) | vl::Molecule | [inline] |
| setMoleculeToActorMapEnabled(bool enabled) | vl::Molecule | [inline] |
| setObjectName(const char *name) | vl::Object | [inline] |
| setRefCountMutex(IMutex *mutex) | vl::Object | [inline] |
| setRingOffset(float offset) | vl::Molecule | [inline] |
| setShowAtomNames(bool show) | vl::Molecule | [inline] |
| setSmoothLines(bool smooth) | vl::Molecule | [inline] |
| setVanDerWaalsAtomRadii(float percentage=1.0f) | vl::Molecule | |
| showAtomNames() const | vl::Molecule | [inline] |
| smoothLines() const | vl::Molecule | [inline] |
| sticksStyle() | vl::Molecule | [protected] |
| tags() | vl::Molecule | [inline] |
| tags() const | vl::Molecule | [inline] |
| transformTree() | vl::Molecule | [inline] |
| transformTree() const | vl::Molecule | [inline] |
| wireframeStyle() | vl::Molecule | [protected] |
| ~Molecule() | vl::Molecule | [inline] |
| ~Object() | vl::Object | [protected, virtual] |