The Bond class represents a bond to be used with the Molecule class. More...

#include <Bond.hpp>

Inheritance diagram for vl::Bond:

Public Member Functions
	Bond ()

	Bond (const Bond &other)

unsigned int	id () const

void	setId (unsigned int id)

void	setBondType (EBondType type)

EBondType	bondType () const

void	setAtom1 (Atom *atom)

Atom *	atom1 () const

void	setAtom2 (Atom *atom)

Atom *	atom2 () const

void	setVisible (bool visible)

bool	visible () const

void	setColor (const fvec4 &color)

const fvec4 &	color () const

void	setUseAtomColors (bool use_atom_color)

bool	useAtomColors () const

float	radius () const

void	setRadius (float radius)

Public Member Functions inherited from vl::Object
	Object ()
	Constructor. More...

	Object (const Object &other)
	Copy constructor: copies the name, ref count mutex and user data. More...

Object &	operator= (const Object &other)
	Copy operator: copies the object's name, ref count mutex and user data. More...

const std::string &	objectName () const
	The name of the object, by default set to the object's class name. More...

void	setObjectName (const char *name)
	The name of the object, by default set to the object's class name in debug builds. More...

void	setObjectName (const std::string &name)
	The name of the object, by default set to the object's class name in debug builds. More...

void	setRefCountMutex (IMutex *mutex)
	The mutex used to protect the reference counting of an Object across multiple threads. More...

IMutex *	refCountMutex ()
	The mutex used to protect the reference counting of an Object across multiple threads. More...

const IMutex *	refCountMutex () const
	The mutex used to protect the reference counting of an Object across multiple threads. More...

int	referenceCount () const
	Returns the number of references of an object. More...

void	incReference () const
	Increments the reference count of an object. More...

void	decReference ()
	Decrements the reference count of an object and deletes it if both automaticDelete() is `true` the count reaches 0. More...

void	setAutomaticDelete (bool autodel_on)
	If set to true the Object is deleted when its reference count reaches 0. More...

bool	automaticDelete () const
	If set to true the Object is deleted when its reference count reaches 0. More...

template<class T >
T *	as ()
	Casts an Object to the specified class. More...

template<class T >
const T *	as () const
	Casts an Object to the specified class. More...

Protected Attributes
fvec4	mColor

float	mRadius

Atom *	mAtom1

Atom *	mAtom2

EBondType	mType

unsigned int	mId

bool	mVisible

bool	mUseAtomColors

Protected Attributes inherited from vl::Object
std::string	mObjectName

IMutex *	mRefCountMutex

int	mReferenceCount

bool	mAutomaticDelete

Additional Inherited Members
Protected Member Functions inherited from vl::Object
virtual	~Object ()

Detailed Description

The Bond class represents a bond to be used with the Molecule class.

See also

Definition at line 62 of file Bond.hpp.

Constructor & Destructor Documentation

◆ Bond() [1/2]

vl::Bond::Bond ( )

inline

Definition at line 67 of file Bond.hpp.

◆ Bond() [2/2]

vl::Bond::Bond ( const Bond & other )

inline

Definition at line 71 of file Bond.hpp.

Member Function Documentation

◆ atom1()

Atom* vl::Bond::atom1 ( ) const

inline

Definition at line 80 of file Bond.hpp.

References mAtom1.

Referenced by vl::Molecule::ballAndStickStyle(), vl::Molecule::bond(), vl::Molecule::computeAtomAdjacency(), vl::Molecule::eraseBond(), vl::Molecule::incidentBonds(), vl::Molecule::operator=(), vl::Molecule::sticksStyle(), and vl::Molecule::wireframeStyle().

◆ atom2()

Atom* vl::Bond::atom2 ( ) const

inline

Definition at line 83 of file Bond.hpp.

References mAtom2.

Referenced by vl::Molecule::ballAndStickStyle(), vl::Molecule::bond(), vl::Molecule::computeAtomAdjacency(), vl::Molecule::eraseBond(), vl::Molecule::incidentBonds(), vl::Molecule::operator=(), vl::Molecule::sticksStyle(), and vl::Molecule::wireframeStyle().

◆ bondType()

EBondType vl::Bond::bondType ( ) const

inline

Definition at line 77 of file Bond.hpp.

References mType.

Referenced by vl::RingExtractor::keepAromaticCycles().

◆ color()

const fvec4& vl::Bond::color ( ) const

inline

Definition at line 89 of file Bond.hpp.

References mColor.

Referenced by vl::Molecule::ballAndStickStyle(), setColor(), vl::Molecule::sticksStyle(), and vl::Molecule::wireframeStyle().

◆ id()

unsigned int vl::Bond::id ( ) const

inline

Definition at line 73 of file Bond.hpp.

References mId.

Referenced by setId().

◆ radius()

float vl::Bond::radius ( ) const

inline

Definition at line 94 of file Bond.hpp.

References mRadius.

Referenced by vl::Molecule::ballAndStickStyle(), setRadius(), and vl::Molecule::sticksStyle().

◆ setAtom1()

void vl::Bond::setAtom1 ( Atom * atom )

inline

Definition at line 79 of file Bond.hpp.

References mAtom1.

Referenced by vl::Molecule::addBond().

◆ setAtom2()

void vl::Bond::setAtom2 ( Atom * atom )

inline

Definition at line 82 of file Bond.hpp.

References mAtom2.

Referenced by vl::Molecule::addBond().

◆ setBondType()

void vl::Bond::setBondType ( EBondType type )

inline

Definition at line 76 of file Bond.hpp.

References mType.

◆ setColor()

void vl::Bond::setColor ( const fvec4 & color )

inline

Definition at line 88 of file Bond.hpp.

References color(), and mColor.

◆ setId()

void vl::Bond::setId ( unsigned int id )

inline

Definition at line 74 of file Bond.hpp.

References id(), and mId.

◆ setRadius()

void vl::Bond::setRadius ( float radius )

inline

Definition at line 95 of file Bond.hpp.

References mRadius, and radius().

◆ setUseAtomColors()

void vl::Bond::setUseAtomColors ( bool use_atom_color )

inline

Definition at line 91 of file Bond.hpp.

References mUseAtomColors.

◆ setVisible()

void vl::Bond::setVisible ( bool visible )

inline

Definition at line 85 of file Bond.hpp.

References mVisible, and visible().

◆ useAtomColors()

bool vl::Bond::useAtomColors ( ) const

inline

Definition at line 92 of file Bond.hpp.

References mUseAtomColors.

Referenced by vl::Molecule::ballAndStickStyle(), vl::Molecule::sticksStyle(), and vl::Molecule::wireframeStyle().

◆ visible()

bool vl::Bond::visible ( ) const

inline

Definition at line 86 of file Bond.hpp.

References mVisible.

Referenced by setVisible(), and vl::Molecule::wireframeStyle().

Member Data Documentation

◆ mAtom1

Atom* vl::Bond::mAtom1

protected

Definition at line 100 of file Bond.hpp.

Referenced by atom1(), and setAtom1().

◆ mAtom2

Atom* vl::Bond::mAtom2

protected

Definition at line 101 of file Bond.hpp.

Referenced by atom2(), and setAtom2().

◆ mColor

fvec4 vl::Bond::mColor

protected

Definition at line 98 of file Bond.hpp.

Referenced by color(), and setColor().

◆ mId

unsigned int vl::Bond::mId

protected

Definition at line 103 of file Bond.hpp.

Referenced by id(), and setId().

◆ mRadius

float vl::Bond::mRadius

protected

Definition at line 99 of file Bond.hpp.

Referenced by radius(), and setRadius().

◆ mType

EBondType vl::Bond::mType

protected

Definition at line 102 of file Bond.hpp.

Referenced by bondType(), and setBondType().

◆ mUseAtomColors

bool vl::Bond::mUseAtomColors

protected

Definition at line 105 of file Bond.hpp.

Referenced by setUseAtomColors(), and useAtomColors().

◆ mVisible

bool vl::Bond::mVisible

protected

Definition at line 104 of file Bond.hpp.

Referenced by setVisible(), and visible().

The documentation for this class was generated from the following file:

C:/git/VL/src/vlMolecule/Bond.hpp

Public Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ Bond() [1/2]

◆ Bond() [2/2]

Member Function Documentation

◆ atom1()

◆ atom2()

◆ bondType()

◆ color()

◆ id()

◆ radius()

◆ setAtom1()

◆ setAtom2()

◆ setBondType()

◆ setColor()

◆ setId()

◆ setRadius()

◆ setUseAtomColors()

◆ setVisible()

◆ useAtomColors()

◆ visible()

Member Data Documentation

◆ mAtom1

◆ mAtom2

◆ mColor

◆ mId

◆ mRadius

◆ mType

◆ mUseAtomColors

◆ mVisible