/home/master/UCL/VisualizationLibrary/src/vlVolume/MarchingCubes.hpp

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/*  Visualization Library                                                             */
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#ifndef MarchingCubes_INCLUDE_ONCE
#define MarchingCubes_INCLUDE_ONCE

#include <vlVolume/link_config.hpp>
#include <vlGraphics/Geometry.hpp>

namespace vl
{
  //------------------------------------------------------------------------------
  // Volume
  //------------------------------------------------------------------------------
  class VLVOLUME_EXPORT Volume: public Object
  {
    VL_INSTRUMENT_CLASS(vl::Volume, Object)

    
    struct Cube
    {
      Cube(): mMin(0), mMax(0) {}
      float mMin, mMax;
      bool includes(float v) const { return v >= mMin && v <= mMax; }
    };
  public:
    Volume();

    void setup(float* data, bool use_directly, bool copy_data, const fvec3& bottom_left, const fvec3& top_right, const ivec3& slices);

    void setup(const Volume&);

    ref<Volume> downsample() const;

    const float* values() const { return mValues; }

    float* values() { return mValues; }

    const float& value(int i) const { return mValues[i]; }

    float& value(int i) { return mValues[i]; }

    const float& value(int x, int y, int z) const { return mValues[x + mSlices.x()*y + mSlices.x()*mSlices.y()*z]; }

    float& value(int x, int y, int z) { return mValues[x + mSlices.x()*y + mSlices.x()*mSlices.y()*z]; }

    void normalHQ(fvec3& normal, const fvec3& v, float dx, float dy, float dz);

    void normalLQ(fvec3& normal, const fvec3& v, float dx, float dy, float dz);

    float sampleSmooth(float x, float y, float z) const;

    float sampleNearest(float x, float y, float z) const;

    fvec3 coordinate(int x, int y, int z) const { return mBottomLeft + fvec3(float(mCellSize.x()*x), float(mCellSize.y()*y), float(mCellSize.z()*z)); }

    const fvec3& bottomLeft() const { return mBottomLeft; }

    const fvec3& topRight() const { return mTopRight; }

    const ivec3& slices() const { return mSlices; }

    fvec3 size() const { return mSize; }

    float computeMinimum() const;

    float computeMaximum() const;

    float computeAverage() const;

    float minimum() const { return mMinimum; }

    float maximum() const { return mMaximum; }

    float average() const { return mAverage; }

    const Volume::Cube& cube(int x, int y, int z) const 
    { 
      VL_CHECK(x<slices().x()-1)
      VL_CHECK(y<slices().y()-1)
      VL_CHECK(z<slices().z()-1)
      return mCubes[ x + y*(slices().x()-1) + z*(slices().x()-1)*(slices().y()-1) ]; 
    }

    const fvec3& cellSize() const { return mCellSize; }

    bool dataIsDirty() const { return mDataIsDirty; }

    void setDataDirty() { mDataIsDirty = true; }

    void setupInternalData();

  protected:
    std::vector<float> mInternalValues;
    float* mValues;
    fvec3 mBottomLeft;
    fvec3 mTopRight;
    fvec3 mSize;
    ivec3 mSlices;
    fvec3 mCellSize;
    float mMinimum;
    float mMaximum;
    float mAverage;
    bool mDataIsDirty;

    std::vector<Cube> mCubes;
  };
  //------------------------------------------------------------------------------
  // VolumeInfo
  //------------------------------------------------------------------------------
  class VolumeInfo: public Object
  {
    VL_INSTRUMENT_CLASS(vl::VolumeInfo, Object)

  public:
    VolumeInfo()
    {
      VL_DEBUG_SET_OBJECT_NAME()
      mThreshold = 0;
      mVolume = NULL;
      mVert0 = -1;
      mVertC = -1;
    }

    VolumeInfo(Volume* vol, float threshold)
    {
      VL_DEBUG_SET_OBJECT_NAME()
      mThreshold = threshold;
      mVolume = vol;
      mVert0 = -1;
      mVertC = -1;
    }

    VolumeInfo(Volume* vol, float threshold, const fvec4& color)
    {
      VL_DEBUG_SET_OBJECT_NAME()
      mColor = color;
      mThreshold = threshold;
      mVolume = vol;
      mVert0 = -1;
      mVertC = -1;
    }

    void setColor(const fvec4& col) { mColor = col; }
    const fvec4& color() const { return mColor; }

    void setThreshold(float t) { mThreshold = t; }
    float threshold() const { return mThreshold; }

    void setVolume(Volume* vol) { mVolume = vol; }
    const Volume* volume() const { return mVolume.get(); }
    Volume* volume() { return mVolume.get(); }

    void setVert0(int index) { mVert0 = index; }
    int vert0() const { return mVert0; }

    void setVertC(int count) { mVertC = count; }
    int vertC() const { return mVertC; }

  protected:
    fvec4 mColor;
    float mThreshold;
    ref<Volume> mVolume;
    int mVert0, mVertC;
  };
  //------------------------------------------------------------------------------
  // MarchingCubes
  //------------------------------------------------------------------------------
  class VLVOLUME_EXPORT MarchingCubes
  {
  public:
    MarchingCubes();
  
    void run(bool generate_colors);

    void reset();

    const Collection<VolumeInfo>* volumeInfo() const { return &mVolumeInfo; }
    Collection<VolumeInfo>* volumeInfo() { return &mVolumeInfo; }

    void updateColor(const fvec3& color, int volume_index);
    void updateColor(const fvec4& color, int volume_index);
    void updateAlpha(float alpha, int volume_index);

    void setHighQualityNormals(bool hq) { mHighQualityNormals = hq; }
    bool highQualityNormals() const { return mHighQualityNormals; }

  public:
    ref<ArrayFloat3> mVertsArray;
    ref<ArrayFloat3> mNormsArray;
    ref<ArrayFloat4> mColorArray;
    
    // OpenGL ES does not support DrawElementsUInt
#if defined(VL_OPENGL)
    ref<DrawElementsUInt> mDrawElements;
#else
    ref<DrawElementsUShort> mDrawElements;
#endif

  protected:
    void computeEdges(Volume*, float threshold);
    void processCube(int x, int y, int z, Volume* vol, float threshold);

  private:
    std::vector<fvec3> mVerts;
    std::vector<fvec3> mNorms;
    std::vector<fvec4> mColors;
    
#if defined(VL_OPENGL)
    typedef unsigned int IndexType;
#else
    typedef unsigned short IndexType;
#endif
    std::vector<IndexType> mIndices;

    struct Edge
    {
      Edge(): mX(-1), mY(-1), mZ(-1) {}
      int mX, mY, mZ;
    };
    std::vector<Edge>  mEdges;
    std::vector<usvec3> mCubes;
    Collection<VolumeInfo> mVolumeInfo;
    bool mHighQualityNormals;

  protected:
    static const int mTriangleConnectionTable[256][16];
    static const int mCubeEdgeFlags[256];
  };
  //------------------------------------------------------------------------------
}

#endif